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Search for promoters in bacterial DNA sequences

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RELATED ARTICLES

  1. Ozoline O.N., Deev A.A. Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm. J. Bioinf. Comput. Biol. 2006. V. 4. P. 443-454. doi: 10.1142/S0219720006001916
  2. Shavkunov K.S., Masulis I.S., Tutukina M.N., Deev A.A., Ozoline O.N. Gains and unexpected lessons in genome-scale promoter mapping. Nucl. Acids Res.. 2009. V. 37. P. 4419-4431. doi: 10.1093/nar/gkp490
  3. Ozoline O.N., Deev A.A., Arkhipova M.V. Noncanonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by E.coli RNA polymerase. Nucl. Acids Res. 1997. V. 25. N 23. P. 4703-4709. doi: 10.1093/nar/25.23.4703
  4. Ozoline O.N., Deev A., Arkhipova M., Chasov V., Travers A. Proximal transcribed regions of bacterial promoters have non-random distribution of A/T-tracts. Nucl. Acids Res. 1999. V. 27. P. 4768-4774. doi: 10.1093/nar/27.24.4768
  5. Ozoline O.N., Deev A.A., Trifonov E.N. DNA bendability - a novel feature in E.coli promoter recognition. J. Biomol. Struct. Dynamics. 1999. V. 16. P. 825-831.
  6. Kiselev S.S., Ozoline O.N.Structure-Specific Modules as Indicators of Promoter DNA in Bacterial Genomes. Mathematical Biology and Bioinformatics. 2011. V. 6. P. 39-52. doi: 10.17537/2011.6.t1
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